PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_27498
Common NameKK1_028127
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YB
Protein Properties Length: 101aa    MW: 12012.5 Da    PI: 7.5077
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_27498genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB145.99.3e-461801796
          NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96
                   mk++lP+nakisk+aket+qecvsefisfvtseasdkc++e+rkt+ngdd++walatlGf+dyvep++ yl++yre+e +
  C.cajan_27498  1 MKQILPQNAKISKEAKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDICWALATLGFDDYVEPMRRYLHRYREVEIH 80
                   9****************************************************************************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.0E-42193IPR009072Histone-fold
SuperFamilySSF471131.48E-31190IPR009072Histone-fold
PfamPF008083.3E-21155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.4E-191937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.4E-193856No hitNo description
PRINTSPR006155.4E-195775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MKQILPQNAK ISKEAKETMQ ECVSEFISFV TSEASDKCRK ERRKTVNGDD ICWALATLGF  60
DDYVEPMRRY LHRYREVEIH HQERGNSPQE KDELHKLRDR S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-341761792Transcription factor HapC (Eurofung)
4g92_B1e-341761792Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-67AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598369.11e-58PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-44NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A151S5P79e-72A0A151S5P7_CAJCA; Nuclear transcription factor Y subunit B-5
STRINGGLYMA07G37840.24e-50(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-45nuclear factor Y, subunit B5